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The Transporter Rooms serve as long distance travel hubs for those needing to enter or leave the ship without the use of a shuttlecraft. The person it transported by breaking down their molecules and assembling them at their destination. The Independence has 12 Transporter Rooms throughout the ship plus units in each of the cargo bays.

The Sovereign class transporter room was seen briefly in Star Trek: Insurrection and was a redressed Voyager transporter set.

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